rs46933625 SNP Detail

Summary

• ID
  rs46933625
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:11889078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCGCTGCC AACGATAGTG
  TTTGTGTAAA AAATATAAAC GTGTGTTCGA AACCATGGTG CAAGATAGAA TATTTGTCTA
  GAGATCAGTT TTCAATAGGC CAGGAGCAAG ATAGTCGATT TTTATTAATA ACGAAAAGTA
  TTAAATAGAA ATAAAGTGAA AGATGAAGAC CTTTAGATCG GAGGGTGTTG AAGCCATGGC
  R
  GTTGAAACAG ATGACAGTGG GAATGGTTGA GGTCCCAGAG TACGAGGGTG CTGACTTCTC
  ACCTGTCTCC TGCCATGCTT AGGAAGCCCT GGACTTGTTT GTTTCTGTTC TACATCTCAA
  AGAAGTTCTG CAGATTGTGA GGGGGTGGAA ATTAGCAAGA CTGTGTAAGA ACCTTGTGAA
  GATGTTAATA CTGGTCAATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60574284	NES16042070	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G		A	G	G	A		G
ss322494092	CHEV_8_11839078	CHEVERUD	SCREENING_POP	f	SNP										G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46933625					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60574284	NES16042070	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:11889078 () rs orientation: forward

Symbol	Name	Function Class
Gm15875	predicted gene 15875	within coordinates
Tex29	testis expressed 29	1410 bp upstream
Tssr76253	transcription start site region 76253	1423 bp upstream
Tssr76254	transcription start site region 76254	1436 bp upstream
Tssr76255	transcription start site region 76255	1490 bp upstream