rs46935062 SNP Detail

Summary

• ID
  rs46935062
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:112573972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTATAAATA ATAGAGTTGT
  GCTGAACTCA AGGCTTCTCT TTTTTTTACA TAAACATTGT GTTTCTTTGA AGTGCATTTA
  ATTTTTGTCA ATTAAATATG TAACAAATAA GTGCAATTGA GAGCAGGAAT TCATGTTGTT
  CTGGCAAATA TTCTTCCTGA TATGCCAAAA TTCACTTAAA GTATTTCTAT TAAGCAAAAT
  S
  TATAACTCAA GGCTTTCTCG TGTTTTTCCA TTTATAGACC CTTTTCCACC TAAGAAATTT
  TTACATGGCA TATAGAACAG GTATACAAAC AAGGCATATA AAACAGGTAT ACAAACCAAA
  CTATTTTAAA GTCGTCCTTT AGCACCATAT TCTTTTTTAA TTTAATTTTA TTTGTAATTC
  ATTTTTTACA CTCCATATTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52696250	NES15540335	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	G	G		C	C	C	C
ss145238543	ENSMUSSNP1233524	ENSEMBL	ENSEMBL_Sanger	f	SNP		C										G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46935062					SNP	C	C	C	C	C	C	G	C	C	G	G	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52696250	NES15540335	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:112573972 () rs orientation: forward

Symbol	Name	Function Class
Gm48876	predicted gene, 48876	within coordinates
Gm59881	predicted gene, 59881	1916 bp upstream
Gm59893	predicted gene, 59893	1390 bp downstream
Rr395952	regulatory region 395952	759 bp upstream
Rr486369	regulatory region 486369	1488 bp distal
Rr486370	regulatory region 486370	495 bp proximal
Rr486371	regulatory region 486371	595 bp proximal
Rr486372	regulatory region 486372	1437 bp proximal
Rr486373	regulatory region 486373	1938 bp proximal
Tssr121117	transcription start site region 121117	710 bp upstream
Tssr121118	transcription start site region 121118	789 bp upstream
Tssr124051	transcription start site region 124051	601 bp downstream