rs46935139 SNP Detail

Summary

• ID
  rs46935139
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37991327 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTAAAGC GAACTTCTAG
  GCAGGGTAAC ATCACAGAAT TTGCCCAAGG TCACATGTCT GATGAGTGGC TGAGTAGGGA
  CTGACTCCTA AGTGTACTCT CCTGGCCACC ATACTGTTTC TTTATCTTTT CACAGTTTCC
  ATGAAAGTCC TTTTTTGACT ATTTCCTACT GGGGGTCAAA CTTGTTAGAT TAGATTATTA
  C
  ACTATTATTG CATGTCTATA TGAGGGATGG AATTCCCCCC ACCCCCAACT TCCTAAGTCA
  TCTTAATGCA CTGGATAAAG AGCTTGAGCT GCCACACACG CCATCTATTG TATGTTTGTG
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGCTTG TGTGTTCCTT GTCAAGTCTT
  TCTGCTGGAG TATGGATAAC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss134818196	ENSMUSSNP6361653	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320714200	CHEV_3_37836100	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46935139					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37991327 () rs orientation: forward

Symbol	Name	Function Class
Gm20755	predicted gene, 20755	within coordinates
Rr1891	regulatory region 1891	86 bp distal
Rr575590	regulatory region 575590	1457 bp distal
Rr575591	regulatory region 575591	1099 bp distal
Rr575592	regulatory region 575592	268 bp distal
Rr575593	regulatory region 575593	250 bp proximal