rs46935539 SNP Detail

Summary

• ID
  rs46935539
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161346312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGACCAAA AGCAATTCAG
  GGGAGGGAAA AGTTTATTTG GCTATGGTCC TTTATTTGGG GGGAAGTCAA GGCAGGAACT
  CAGGCAGCTT GCTGTTTGTT TTGTTTTGTT TTGTTTTGTT TTGTTTTTCT GTCTGTAAAT
  CCACACACAT AGTTTTTCCC ACATATTATA TTTCCAAACA AATGCTTGTG ATTCTTATTT
  Y
  ATTTCAAGGT AGGTAAGTGC AGAGAGATAC ACCCCATGCT ACCTGCTTGC TTCCAGACAG
  CCTCTTCCAC TCTCCCACAC TTCCACAGTC TTAAAATCTC TGTCAATGGA ATGTGATGAT
  ACCAATAGTG GGCTGGGTTA GTTAACCATC AAAACAATCC CCCATAGACA TGCCTGTAGA
  ATAATCTGAT ATAAGCGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60336259	NES15835501	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46935539					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60336259	NES15835501	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161346312 () rs orientation: forward

Symbol	Name	Function Class
Gm31815	predicted gene, 31815	within coordinates
Rr421813	regulatory region 421813	1052 bp distal