rs46935720 SNP Detail

Summary

• ID
  rs46935720
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:60630921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTCCATC AAAGCCACAC
  CTCCTAATCC TCCTAATCCT ATTAAAGAGT TTCACTCCCA GCTTCGAATA CCTTTACATA
  TTTTTATGAT AAAAGTACAA ATAACCGAAA AGAAGCATCA TCAGAGCAGT AATAATCCCT
  GCCATATTTC TGTAACTCTA CGTCCCACGG ACTCGTACGG TCTTCTACCG CCAATGAGGA
  M
  AGTCCATTTC ACATGAGAAC CCCGATGGTT TGATAGGGTA AATGACCTTC CCGCAAGACG
  AGGAAGCAGG ATGTGAATCC ACAGTCCCTT TGATACAAAA ACCTATGATC TCAATGACTA
  TTTCGATTTA AACCAGCAAA CATGGGATAA GAGCTGACAC AAAGCTCTGG TAAGGGGTGG
  AGATTGGGAA GATGGAAAGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss63529570	NES17015457	PERLEGEN	MM_PANEL2	f	SNP	C	C	A	C		A	C	A		C
ss324986546	CHEV_15_60590627	CHEVERUD	SCREENING_POP	f	SNP					C				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs46935720					SNP	C	C	A	C	C	A	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63529570	NES17015457	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:60630921 () rs orientation: forward

Symbol	Name	Function Class
Gm48947	predicted gene, 48947	1159 bp upstream
Rr303268	regulatory region 303268	680 bp proximal
Rr313850	regulatory region 313850	681 bp proximal