rs46936476 SNP Detail

Summary

• ID
  rs46936476
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60869161 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGGCCTT TAGTGTAACA
  GTCAAAAGCT ACTGGGAGTC AGGCAATTGG CTCAGTATAA CCCTGATTCT CCTTTTGTGC
  CCAGGCACGT TGGTCAGGAG TCTGTCTTCA GCCTGTCATG GCAGCAGCTC AGCTTCAGTG
  ACCAATCTAT ACTCACTCAC AGGAGACTCT GAAATCCCAG ATTCTGTGCT ATAAAGTCCC
  Y
  GCTCGAGTGA GTCGTGACTG CTCCAAACAG CCTGGGCAGC TGCGAACCCT CATGGCATCT
  AGGTGACCCT GTTCATCCTA CAGCTGTTCT CACTGAGGGG AGGGGAGCTT TTGAGTGAGC
  CAGTCAAAAC TCTGTGCTCG GTGATCCTGT GAGGCTCGGA ACGGTGGCAC CCGAAGCCAT
  GGGTGCACAC ACAAACAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52344317	NES15283563	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46936476					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52344317	NES15283563	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60869161 () rs orientation: forward

Symbol	Name	Function Class
Gm20610	predicted gene 20610	within coordinates
Gm20611	predicted gene 20611	within coordinates
Rr219922	regulatory region 219922	840 bp proximal