rs46936856 SNP Detail

Summary

• ID
  rs46936856
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:28684190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAGC CCCAGGAATT GAAGAGGGGC
  R
  ACTGAGCAGA TGGATACCTG AGCAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52348261	NES15378186	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G	G	A	G	A	A	A	A	A	G
ss137502162	ENSMUSSNP609711	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46936856					SNP	A	A	G	G	G	G	G	G	A	G	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52348261	NES15378186	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:28684190 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4510	CpG island 4510	1074 bp proximal
Gm53713	predicted gene, 53713	1878 bp upstream
Rps7	ribosomal protein S7	within coordinates
Rr265285	regulatory region 265285	within coordinates
Rr369505	regulatory region 369505	1606 bp upstream
Tssr116014	transcription start site region 116014	1042 bp downstream
Tssr116015	transcription start site region 116015	1641 bp downstream
Tssr116016	transcription start site region 116016	1652 bp downstream
Tssr116017	transcription start site region 116017	1676 bp downstream
Tssr116018	transcription start site region 116018	1700 bp downstream
Tssr116019	transcription start site region 116019	1723 bp downstream