rs46938005 SNP Detail

Summary

• ID
  rs46938005
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:36418699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATAGCTA TATTTATAAG
  ATAAAAAAGC ACTTTGTCAT TTGCTTAACA CAATAATCAG GATTGCAGTG AATTTTCTAG
  GAAAAACCCA ACAATCAGCT TTTTTGCCTT AAAACTAAGA AGCTGCAGAC TCCCTTTCTT
  TGAAAGCAGC TTTTTCAGCA GTGGCTCCCC TGCTGTGCTT AATTCTCAGT CAAAATGTGA
  G
  CCATTCTCAG GCTTTGCTGA ACCAGCAGAT AAAGTCTTAG CCATTTTTAT TTTCCAACAT
  GAAACACAGA ACATTCAGTC ATTCAGACAA CGAGACAAAA CACACATGGA TTGACACGTA
  AACGGATTTG GTGCACCAGA CATTAGACAA CACAAAGAGG GCAGAGAACT GTAGAGCCAG
  AGAGAATAAA GCAGGGCATT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss145549895	ENSMUSSNP4707553	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs46938005					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:36418699 () rs orientation: forward

Symbol	Name	Function Class
Gm54002	predicted gene, 54002	952 bp downstream
Gm66184	predicted gene, 66184	770 bp downstream
H2-T11-ps	histocompatibility 2, T region locus 11, pseudogene	1427 bp downstream
Rr392573	regulatory region 392573	within coordinates