GGACCACAGC TGCTGCTTGT TGCTTTCTCC TACCTAGTTC CTGAGCTGTG AGGGCAGGCA TGGTCTATTA GTGAGGCTTT GATCTCTGGT GGTTACCACA TTTATTTTTA TTGCATGGAA TTGGAAGAAT ATAAATGTTT AAGGCATTCA TTTTTTTTCT TCCACATTAC TTAGTATATG CGTTTTGTAA GTGACACTCC Y GCATGTTTGT TTCTCTTTCC TGTTCGTGTA ATATGTATTT GTGAAAGCCA CGGTGAGACT GGATATGATC ACTTATTTCT GAAGTCTGGT GACTACCTAC AGCATAAAAC AACTATTTTA AAAGGAAATA ATACTTTTGT GAATTGAGGC AGCAGCTTTG CTCACGTGAC ACCCACTGAC TACTAGAATG TGCCCAGACA Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss60415169 | NES15910149 | PERLEGEN | MM_PANEL2 | f | SNP | T | T | T | T | T | T | T | T | T | T | C | T | T | C | T |
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs46938466 | SNP | T | T | T | T | T | T | T | T | T | T | C | T | T | C | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss60415169 | NES15910149 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr3:59041109 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Med12l | mediator complex subunit 12-like | within coordinates | ||||||
P2ry14 | purinergic receptor P2Y, G-protein coupled, 14 | within coordinates | ||||||
Rr577324 | regulatory region 577324 | 1190 bp distal | ||||||
Rr577325 | regulatory region 577325 | 158 bp distal | ||||||
Tssr29228 | transcription start site region 29228 | 1822 bp downstream | ||||||
Tssr29229 | transcription start site region 29229 | 1370 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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