rs46938547 SNP Detail

Summary

• ID
  rs46938547
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24569646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAAC CTTTGAATAC GCTATTACTA
  T
  CATTTCAATT TTAGGAATGA GAAAT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss145351411	ENSMUSSNP5453565	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss325330809	CHEV_17_24487617	CHEVERUD	SCREENING_POP	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs46938547					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24569646 () rs orientation: forward

Symbol	Name	Function Class
Abca3	ATP-binding cassette, sub-family A member 3	1351 bp upstream
Abca17	ATP-binding cassette, sub-family A member 17	within coordinates
Cpgi8716	CpG island 8716	151 bp proximal
D17Jcs14	DNA segment, Chr 17, John C. Schimenti 14	1737 bp distal
Rr405082	regulatory region 405082	1046 bp upstream
Rr523280	regulatory region 523280	197 bp proximal
Rr523281	regulatory region 523281	347 bp proximal
Rr523282	regulatory region 523282	547 bp proximal
Rr523283	regulatory region 523283	1232 bp proximal
Rr523284	regulatory region 523284	1385 bp proximal
Rr523285	regulatory region 523285	1435 bp proximal
Tssr143021	transcription start site region 143021	1265 bp upstream
Tssr143022	transcription start site region 143022	1282 bp upstream
Tssr143023	transcription start site region 143023	1345 bp upstream
Tssr143024	transcription start site region 143024	1365 bp upstream
Tssr146725	transcription start site region 146725	381 bp downstream
Tssr146726	transcription start site region 146726	400 bp downstream