rs46938958 SNP Detail

Summary

• ID
  rs46938958
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:85325708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACTC CATGCAGACT CAGGAAGAGC
  Y
  GGAAGAGCAG ATAGGCCTGA GACCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60644353	NES16270732	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T	T	T	T	T		C	T	T	C		T
ss145390142	ENSMUSSNP312792	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T					T
ss322750920	CHEV_8_87122978	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46938958					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60644353	NES16270732	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85325708 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna1a	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit			Intron
				Noncoding-Transcript-Variant
Cpgi20697	CpG island 20697			1502 bp proximal
Gm64375	predicted gene, 64375			within coordinates
Rr666538	regulatory region 666538			1160 bp proximal
Tssr78403	transcription start site region 78403			1929 bp downstream
Tssr78404	transcription start site region 78404			1189 bp downstream
Tssr78405	transcription start site region 78405			1159 bp downstream