rs46939046 SNP Detail

Summary

• ID
  rs46939046
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:22182330 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTATGGTTGT GATTGTAAAC ATTAATATTT ACTAAGTAGA
  CTTTAGTGTT GTATGCAGTT TCGGATGTAA ATAAAGCATT CAGAAGTGCG TCTTCATATG
  T
  TGAGTTCTTA TGGTACACCT TAGGGCCAGG CAAGCTCACT ATTGCTATGT GAGTGTATCA
  GACCACTCTA TTGTTATGAT TAGAAAACCC AGTATAGAT                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145294207	ENSMUSSNP6427365	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss325322953	CHEV_17_22100316	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46939046					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:22182330 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8665	CpG island 8665	390 bp distal
Gm7805	predicted gene 7805	787 bp downstream
Rr405064	regulatory region 405064	646 bp downstream
Rr523003	regulatory region 523003	909 bp distal
Rr523004	regulatory region 523004	780 bp distal
Rr523005	regulatory region 523005	within coordinates
Tssr142901	transcription start site region 142901	597 bp downstream
Tssr142902	transcription start site region 142902	240 bp upstream
Zfp942	zinc finger protein 942	885 bp upstream
Zfp943	zinc finger prtoein 943	within coordinates