rs46939142 SNP Detail

Summary

• ID
  rs46939142
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:43872740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCACTGAG TGTTTTTACA
  GAGAATACAA AGAATACGAG TCTCCTAGGT TTTCTGATCG CTCAAAGCAT CTTTCCTATA
  CTTTCCATAG TACAACACTG ACATTCACAA ATGCCTTGAA ACATAACTTA TTCTCCCGGC
  TTGGCCACAA ATGTCTTGGG GGAGGAAGTG TTGGTGTCTT TGTTTCTTGG ACTCCAAGAG
  W
  TCCTTGCACA TAGATTTAAA AGTGCACAGA GGTAGGGGTA GAGGGGTGAG GCAGTGGTGG
  TGCACACCTT TAATCATAGC ACAGAGGCAG GTGGATCTCT GTGAATTCAA GGCCAGCCAG
  GTCTACACAA CTAAATCCAG GACAGCCAGA GCTACACAAA GAAACCCTGT CTCAAAACAA
  AACAAAAGGT ACATGGTAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52253961	NES15255741	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46939142					SNP	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52253961	NES15255741	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:43872740 () rs orientation: forward

Symbol	Name	Function Class
Crybg1	crystallin beta-gamma domain containing 1	Intron
Rr384605	regulatory region 384605	within coordinates
Rr430903	regulatory region 430903	within coordinates
Tssr97483	transcription start site region 97483	382 bp upstream
Tssr97484	transcription start site region 97484	571 bp downstream
Tssr97485	transcription start site region 97485	599 bp downstream
Tssr97486	transcription start site region 97486	620 bp downstream
Tssr97487	transcription start site region 97487	635 bp downstream
Tssr97488	transcription start site region 97488	683 bp downstream