rs46939489 SNP Detail

Summary

• ID
  rs46939489
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:129915408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTCTCTAT GGGTAGCCTT
  GCTAGCCTTG AACTGGTTGC AACCCCCGCT TGCCTTCCGG GAGAAGGAGG CACAAGGGAC
  TATCTTGATG ACAGATGACG CATGCGCTAC AACATGCACT CCCGAGGTTC ACTCCCAGTA
  TGAGCACAAT TTTAGTTTTC TACGATTTTA TTACCCCAAG GAGGGACCTC AGAATCTGGA
  Y
  TGGGGGGAGG GGTGTCAACA ATTTCCTATT TGTTTTTTAG GTCGGCCGGC AAGGTAGCTC
  AATAGATCGT TTACCACAAA ATGGTAGACA TCTTGGACCC AAGTGATGGA AAGACATAGC
  TTTAAATTTT CGGCCCTCTA CACACAGCCC GCAATTTTCT TTGTTTCTTT TTCCTTAAAA
  AAATAAATAA ATAAAAGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss144477338	ENSMUSSNP5922008	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
ss321692403	CHEV_5_130362437	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46939489					SNP	C	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:129915408 () rs orientation: forward

Symbol	Name	Function Class
Chchd2	coiled-coil-helix-coiled-coil-helix domain containing 2	within coordinates
Cpgi16684	CpG island 16684	400 bp proximal
Rr399383	regulatory region 399383	641 bp upstream
Tssr53498	transcription start site region 53498	572 bp downstream
Tssr53499	transcription start site region 53499	721 bp downstream
Tssr53500	transcription start site region 53500	849 bp downstream
Tssr53501	transcription start site region 53501	875 bp downstream