rs46939709 SNP Detail

Summary

• ID
  rs46939709
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:71963156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gttggctga ggacgcagcc tgtttggagc
  ctgaggatct gactcacacc attggctggc aagtgggtgt taattgttgg caagatggtt
  aggtgcctcc ctgcaagggg cctccctgca ggccgcttca gaattctcac agcatggtga
  S
  tgggctctcc aggagggatg ctctacagag gatcaaAAGG ATGTAATCTC AGGACATTGT
  ACCTCTTCCA AAGACAAAGG AAGCAGACAG TGGATTATGA AAGGGAGAAT GTTCGAAGAT
  TTTCTGATAG GTTCCATAGC CTCTATTAAA                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss144648018	ENSMUSSNP2440722	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
ss319787565	CHEV_1_71970571	CHEVERUD	SCREENING_POP	f	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46939709					SNP	G	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:71963156 () rs orientation: forward

Symbol	Name	Function Class
Gm70455	predicted gene, 70455	577 bp downstream
Gm70563	predicted gene, 70563	1758 bp upstream