rs46940163 SNP Detail

Summary

• ID
  rs46940163
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:83529535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTG CTGTGCTGAG ACACCAACTG
  K
  CTATGCTGGC CTCAGACTTA TGGCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss145197714	ENSMUSSNP5583955	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
ss322294671	CHEV_7_91028837	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs46940163					SNP	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:83529535 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19376	CpG island 19376	1883 bp proximal
Gm74146	predicted gene, 74146	1008 bp upstream
Rr381056	regulatory region 381056	242 bp downstream
Rr650491	regulatory region 650491	1019 bp distal
Rr650492	regulatory region 650492	669 bp distal
Tlnrd1	talin rod domain containing 1	mRNA-UTR
Tssr2320	transcription start site region 2320	1891 bp upstream