rs46944659 SNP Detail

Summary

• ID
  rs46944659
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96437427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTC ATTAGGATAA GGAAGAACTG
  Y
  CTTCGACACT CTTTCAAGGC TGGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss132681587	ENSMUSSNP2284532	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss323821049	CHEV_11_96407915	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs46944659					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96437427 () rs orientation: forward

Symbol	Name	Function Class
Rr238060	regulatory region 238060	within coordinates
Rr238061	regulatory region 238061	1774 bp proximal
Rr252639	regulatory region 252639	within coordinates
Skap1	src family associated phosphoprotein 1	within coordinates
Tssr104543	transcription start site region 104543	1878 bp downstream
Tssr104544	transcription start site region 104544	1206 bp downstream
Tssr104545	transcription start site region 104545	1168 bp downstream
Tssr104546	transcription start site region 104546	1152 bp downstream
Tssr104547	transcription start site region 104547	1120 bp downstream
Tssr104548	transcription start site region 104548	1020 bp downstream
Tssr104549	transcription start site region 104549	1003 bp downstream
Tssr104550	transcription start site region 104550	952 bp downstream
Tssr104551	transcription start site region 104551	912 bp downstream
Tssr104552	transcription start site region 104552	904 bp downstream
Tssr104553	transcription start site region 104553	426 bp upstream