rs46945409 SNP Detail

Summary

• ID
  rs46945409
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:64302200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAG CCTGTTCCTA GTAGAGACTC
  A
  ATAAAGATTT TTATATCTGA ATGAG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss149161865	ENSMUSSNP3510640	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss324379431	CHEV_13_64255694	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs46945409					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:64302200 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5773	CpG island 5773	719 bp distal
Cpgi5774	CpG island 5774	148 bp distal
Gm47513	predicted gene, 47513	within coordinates
Gm61554	predicted gene, 61554	within coordinates
Gm61557	predicted gene, 61557	1609 bp downstream
Rr273318	regulatory region 273318	801 bp proximal
Rr281559	regulatory region 281559	within coordinates
Rr403820	regulatory region 403820	1907 bp downstream
Rr403821	regulatory region 403821	749 bp downstream
Tssr120196	transcription start site region 120196	666 bp downstream
Tssr123017	transcription start site region 123017	1931 bp upstream
Tssr123018	transcription start site region 123018	1638 bp upstream
Tssr123019	transcription start site region 123019	1241 bp upstream
Tssr123020	transcription start site region 123020	1197 bp upstream
Tssr123021	transcription start site region 123021	1179 bp upstream
Tssr123022	transcription start site region 123022	1109 bp upstream
Zfp367	zinc finger protein 367	1187 bp upstream