rs46946292 SNP Detail

Summary

• ID
  rs46946292
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:61209509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCTCTCT CTCTCTCTCA
  CACACACACA CACACACACA CACATAATAA ATATTAAAAG ATAACCAAGT GAAGAGTCAC
  AAGGGCATCC AGTGTCTCAC ACATGTGCAT ATATCACACA TACACACAGT CATTATACAG
  AAGCATTCCT GGCCTGGCTC GCTCTGGTTT CTACCCAGAG ACACACATGT GACAAATATC
  Y
  CTGCTCAAAG AGAAGGAAAA GGGGAAAGGA GGGTTTGTTA AGCACCGACC ACCTTCTAGG
  TACTAGGCAC GAAGCTAAGG AATTTGCCCC ACGTGTAGTT TTTTGTTTTT TTTCAATTGC
  CCTGTGAGGA CAGAAGAGCC CATGAGGCTC TGGAGCATCG AGATGCTTCC CGTGCCAGTA
  AAAATAAAAG CCAGTCAGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss136538561	ENSMUSSNP1987188	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss322978672	CHEV_9_61150034	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs46946292					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:61209509 () rs orientation: forward

Symbol	Name	Function Class
Rr204421	regulatory region 204421	1415 bp distal
Rr204422	regulatory region 204422	590 bp proximal
Rr209972	regulatory region 209972	1709 bp distal