rs46947608 SNP Detail

Summary

• ID
  rs46947608
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:36827065 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATTGGGAA CTGGAGGAAG
  AAAAAGGACA CGGTATTCTA AAATACAGCT GGTGTTACCG CCGTCTGCTG CTAAGCACCC
  ACCCTGCCTC CCACAACTTC CTGTTAACAG CCTCCTCAAG AACAGAGCCC GGTGAGTCTG
  AATGAGACTG TGTTCCCATA CTATCATCAA CTTCAGGCCC TAGATGACTA AAAGCAAAGT
  K
  TCAAGGCCTG CCTTCAAGAA TCTGCTCAAG AGAGGCGTGA GAACATGATG CCTAGTGTCA
  CCACCGTCTG CCCTACAGAG AGCTAGGTCA GAAGCAAGCT GGGAGGAGGA GGCAGCCAGA
  GAGTCAGAGC AGAAGCCCCA GTCACACTGA AGCTTGGAAA CAAACCAAGC AAGGGCCAGC
  CCTACTTCTG CATGTGCAGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C3H/HeJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61137489	NES16647933	PERLEGEN	MM_PANEL2	f	SNP	T	G	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C3H/HeJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46947608					SNP	T	G	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61137489	NES16647933	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:36827065 () rs orientation: forward

Symbol	Name	Function Class
D5Ertd579e	DNA segment, Chr 5, ERATO Doi 579, expressed	Intron
Gm25767	predicted gene, 25767	1937 bp upstream
Rr610244	regulatory region 610244	within coordinates
Rr610245	regulatory region 610245	1981 bp proximal