rs46948821 SNP Detail

Summary

• ID
  rs46948821
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:65140835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACACTCC CCTGTTTCGT
  GGTCTCGGAA TCACACTCAT GTTTAGTAAG CGCATGTAAT AAGTAAGAAG TGGCTACATA
  AGTCACTGTG CTAGTCACTT ATGAACGTCA ATCACACAAA AGGTAAAGGC GTGCACCCCC
  TCCTGAGGAG CATCCCTTAT GAGGCACTTT GTTGGAGAAT TACAAAATAA ATCCTGACTG
  S
  TGAAATAATG AATGCCTATA CTGTATTGTA TGCACCCAAC AGGGCTGGGG ATATGCAGCT
  CAGTGAAAGA CTGTTTGTAA CGTGTGTGAG GCTCTAGATT AATTTCCCAG TACTGTCAAA
  GGTGAGGGTG CTCTTGTATT GTACACAGCT AATCTGGAGA TTTGCATCTT AATGATGCTG
  ACTAATTAGA AACTGTACAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60622515	NES16302490	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	C	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46948821					SNP	G	G	G	G	G	C	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60622515	NES16302490	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:65140835 () rs orientation: forward

Symbol	Name	Function Class
Cpe	carboxypeptidase E	Intron
Rr664168	regulatory region 664168	323 bp proximal
Rr664169	regulatory region 664169	982 bp proximal
Tssr81419	transcription start site region 81419	1676 bp downstream