rs46949386 SNP Detail

Summary

• ID
  rs46949386
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88192699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCCTGAATA AGATAAAGAG ACACAGTAAT GGCCAAGGCT
  GGCTAGAGAA GCCCAAGGCA CCAACATCCC ACAAGAAAGG ACAGAGATGA TGCTGTGATA
  Y
  GGAGCAGGGG AGGTGGCTGG ACAGAGGCCA AGTGGCTACA GGGAGCTGCA ATGGAAGACT
  GCTCAGTACA CAGGATGCCC TGGGGACCGT CCTCCAAAAG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63352308	NES17507688	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T	T	C	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46949386					SNP	C	T	T	T	T	T	T	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63352308	NES17507688	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88192699 () rs orientation: forward

Symbol	Name	Function Class
Hjurp	Holliday junction recognition protein	within coordinates
Rr18063	regulatory region 18063	1502 bp proximal
Rr35066	regulatory region 35066	within coordinates
Tssr12870	transcription start site region 12870	112 bp upstream