rs46949666 SNP Detail

Summary

• ID
  rs46949666
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150530690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGACG GGTGGTACAG GCTTGTGTTA
  T
  CAGCTGCTTA AAGGCTAAGG CAGAA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss148053382	ENSMUSSNP427222	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss321429208	CHEV_4_149820342	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs46949666					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150530690 () rs orientation: forward

Symbol	Name	Function Class
Gm52709	predicted gene, 52709	within coordinates
Rere	arginine glutamic acid dipeptide (RE) repeats	Intron
Rr377422	regulatory region 377422	within coordinates
Rr605300	regulatory region 605300	1664 bp distal
Rr605301	regulatory region 605301	419 bp proximal
Rr605302	regulatory region 605302	1346 bp proximal