rs46949886 SNP Detail

Summary

• ID
  rs46949886
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:80175998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGAATCTT AACATGTCCG
  GGCCTCATGG GACAGCTCCA GGCTTAGGGG AGCCCAACAG CCTCACCATA GTGCGACCAG
  CATCGTGTGC CTTTCTGCCA TGTTTCTGCT ACTCTTCCTG CCGGGTGCAT CAGGCTCAGC
  ACAGGGACCC TGTCAGGGAT GACTCTGTCC TGGTCTCTTG TGTCACATTG GCCAGCCATT
  K
  TAGTTGTGTG AGGTTCCTGA AGCCTGCTTG CTGCCGCAGG CCAACTTGTA GGCCATCTCC
  CAAACTGGGA ATCCATGTCC AGCCACCAGG GGGCGCAAGG AATCCACAAA TCCCTGTAGA
  ACGGACCTAC ATTGTGTGGA GTTTGGGGGG ACTACCTTCG AAAGCCCGTT AGACAGAGTG
  ACCCCTGCTT ATCCCGGCAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61291170	NES16900974	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46949886					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61291170	NES16900974	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80175998 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Adamtsl5	ADAMTS-like 5			mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi1873	CpG island 1873			1027 bp proximal
Rr435196	regulatory region 435196			79 bp proximal
Rr435197	regulatory region 435197			175 bp proximal
Rr435198	regulatory region 435198			1569 bp proximal