rs46949890 SNP Detail

Summary

• ID
  rs46949890
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:10990100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACTTAAGT ACTAGAATTA
  GAAAATCAGC ATTTATGAGT TCACTTTATT ATTTGATGGT AAATCTCAAA AAGATTGATA
  TTAAAGCAAC CTGTGCCATT CCCTAACCTT CGTACTGAGC TGCAGAGGAA GTTTGACCTC
  ACGTTGAGAA CCTGTATGGA AGAGTTGAGG CCTATTTTCT TCCATGGGTT CCCAAGCTAA
  R
  TGAAATCTAA ATTGTGCTAA TAGATCCTAT AACTGATACC ACCACCATAG TTTTAAGTCA
  GATAAAGAAA TACTCAATTA AGTGTTCATT TAATTAGAAC TCTAAGCTAT GTCCTTCTTC
  ATAGTGTTAG TTTGGTTCAG TATTTTCAAG TATTCTATTC AGTAAAGACT TGGGATTTTA
  TTCAGCTCAG ATGAGTGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61741563	NES17678404	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	A	G	G	G	A		A	A	G	A		G
ss324260876	CHEV_13_10939310	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46949890					SNP	G	G	A	G	A	G	G	G	A	A	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61741563	NES17678404	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:10990100 () rs orientation: forward

Symbol	Name	Function Class
Rr270342	regulatory region 270342	1500 bp distal
Rr270346	regulatory region 270346	1901 bp proximal
Rr278201	regulatory region 278201	1976 bp proximal