rs46950308 SNP Detail

Summary

• ID
  rs46950308
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135777367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATGATGCA CTTTGGAGGG
  TACATCCAGA AGGTAGGTGC AAAGCAGCAT CGGGCACCAG GACACCCCAG TGTATCCTCA
  AGGCCGCCTT TGCTTGGATC CATGAAGAAA TTCCCAACTG CTGTGGCTGA AGTCTAAGGT
  CTGCTCATGT CTAGCCCCTG AGCTGTCTAT CAGCCTGACC ATGGCTTCAG TAGGAGGGCT
  T
  TGCTGTGTGT GACAGTTAGA ACACTAATAT GTCTCCAAAT TCTGGCTCCC CAAAGGGACA
  ACTGGGAGAA TCTTGGGTCC TGGAGTCCAT GCTCTGGTCT GCAATAACCT CCTTTTTTTT
  CATGTGGCCT GGTACTGCTT GCCCTGTAGT TTCCAAGAGA CAGATGAGCT AACACGTAAA
  ACATAAAAAG AGTGTGCTGC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss145548317	ENSMUSSNP2994779	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs46950308					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135777367 () rs orientation: forward

Symbol	Name	Function Class
Rr12644	regulatory region 12644	1767 bp distal
Rr12645	regulatory region 12645	1034 bp proximal
Tnnt2	troponin T2, cardiac	within coordinates
Tssr225	transcription start site region 225	1889 bp downstream
Tssr226	transcription start site region 226	1619 bp upstream
Tssr227	transcription start site region 227	184 bp upstream
Tssr9015	transcription start site region 9015	1893 bp downstream
Tssr9016	transcription start site region 9016	1641 bp downstream
Tssr9017	transcription start site region 9017	1603 bp downstream
Tssr9018	transcription start site region 9018	1585 bp downstream
Tssr9019	transcription start site region 9019	1552 bp downstream
Tssr9020	transcription start site region 9020	781 bp downstream
Tssr9021	transcription start site region 9021	761 bp downstream
Tssr9022	transcription start site region 9022	273 bp downstream
Tssr9023	transcription start site region 9023	199 bp downstream
Tssr9024	transcription start site region 9024	163 bp downstream
Tssr9025	transcription start site region 9025	116 bp upstream
Tssr9026	transcription start site region 9026	318 bp upstream
Tssr9027	transcription start site region 9027	428 bp upstream
Tssr9028	transcription start site region 9028	468 bp upstream
Tssr9029	transcription start site region 9029	1048 bp upstream
Tssr9030	transcription start site region 9030	1083 bp upstream
Tssr9031	transcription start site region 9031	1142 bp upstream
Tssr9032	transcription start site region 9032	1725 bp upstream
Tssr13890	transcription start site region 13890	1854 bp upstream
Tssr13891	transcription start site region 13891	1609 bp upstream
Tssr13892	transcription start site region 13892	1542 bp upstream
Tssr13893	transcription start site region 13893	1525 bp upstream
Tssr13894	transcription start site region 13894	776 bp upstream
Tssr13895	transcription start site region 13895	732 bp upstream
Tssr13896	transcription start site region 13896	205 bp upstream
Tssr13897	transcription start site region 13897	177 bp upstream
Tssr13898	transcription start site region 13898	1108 bp downstream
Tssr13899	transcription start site region 13899	1176 bp downstream
Tssr13900	transcription start site region 13900	1186 bp downstream
Tssr13901	transcription start site region 13901	1747 bp downstream