rs46951562 SNP Detail

Summary

• ID
  rs46951562
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:23585331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGATATTAG CCCAGAAACT
  TAGAATACCC AAGATACAAG ATACAATTTG CAAAACACAT GAAATTCAAG AAGAACGAAG
  ACCAAAGTGT GGACACTTTG CCCCTTCTTA GAATTGGGAA TAAAACACCC ATGGAAGGAG
  TTACAGAGAC AAAGTTTGGA GCCGAGGCGA AAGGATGGGC CATCTAGAGA CTTCCATACC
  R
  GGGGATCCAT CCCATAATCA GTGACACTGA CACCATTGCA TACATCAGAA GATTTTGCTG
  AAAGGACCCT GATATAGCTG TCTCTTGTGA GGCTATGCCT GGGCCTGGCA AACACAGAAG
  TGGATGCTCA CAGTCATCTA TTGGATGGAA CACAGGGCCC CCAATGGAGG ATCTAGAGAA
  AGTACCCAAG GAGCTAAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	SEA/GnJ	SJL/J	ST/bJ
ss364263953	MGP_WTSI_5_22886151	EVA_MGPV3	EVA_MGPV3	f	SNP	A	G	A	G	A	A	A	A	A	A	A	A	G	A	A	G	A	A	G	A	G	A	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	SEA/GnJ	SJL/J	ST/bJ
rs46951562					SNP	A	G	A	G	A	A	A	A	A	A	A	A	G	A	A	G	A	A	G	A	G	A	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364263953	MGP_WTSI_5_22886151	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:23585331 () rs orientation: forward

Symbol	Name	Function Class
5031425E22Rik	RIKEN cDNA 5031425E22 gene	1969 bp downstream