rs46952129 SNP Detail

Summary

• ID
  rs46952129
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:179343923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A AGAACATCTC AGCCAGGTGT GGTGGTGCAT GCCTTTAATC
  CCAGCACTCA GGAGGCAGAG GCAGGCAGAT TTCTGTCTCG AAAAACAAAA ACAAACAAAC
  A
  AAAAAGAACA TCTCAGGTTG AAGAGATGGT TCAGTGGTTA AGAGCACTGG CTGCCCTTCC
  AGAGCACCTG GGTTCAAAAG ACAATCTCTG ATCATTCCAT T                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146368905	ENSMUSSNP3347837	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46952129					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:179343923 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1095	CpG island 1095	857 bp proximal
Rr396646	regulatory region 396646	1503 bp upstream
Rr424271	regulatory region 424271	1637 bp proximal
Rr424272	regulatory region 424272	1681 bp proximal
Smyd3	SET and MYND domain containing 3	within coordinates
Tssr15501	transcription start site region 15501	1618 bp downstream
Tssr15502	transcription start site region 15502	1634 bp downstream
Tssr15503	transcription start site region 15503	1670 bp downstream