rs46953517 SNP Detail

Summary

• ID
  rs46953517
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:76847943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTACACT TTAACTCACC
  TATTACCTTG GCACGGACTC TGCTCTTGCA TGGATTATAT AATCTGGAAA CGGTCTGTAT
  GGCTCATCAT CACCCCAGTG TTGGCCTCTG GTGTCTCCTT AACAGTTTCC ATGCCTCCCT
  CAGTATTGCC CATCAGAGTA ATGCTCACTG TCTGTTCCAG GATGCCATAC TCCGCTCGCA
  Y
  GGACACTCCA GGCTCATCAT CTGCACTGTT TGCTTGGGTT TGAGGATCAG TCATTTCTGT
  GGAAGCCTCG ATCCTGCCAC AGAAAGTGGT ATTAAAAACC AAGATCTGGA TTCTCCTTTT
  GCCTCTCCCG CAACCTTCAT CATACCTGAG GCTCCTGAAC TAGACAGACA GCAGCATGTT
  GTCTTCTGGG AGGCTCCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52376384	NES15271946	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46953517					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52376384	NES15271946	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76847943 () rs orientation: forward

Symbol	Name	Function Class
D10Jhu61	DNA segment, Chr 10, Johns Hopkins University 61	1850 bp proximal
Gm3137	predicted gene, 3137	within coordinates
Gm10787	predicted gene 10787	within coordinates
Rr434365	regulatory region 434365	190 bp proximal
Tssr94202	transcription start site region 94202	104 bp downstream