rs46954548 SNP Detail

Summary

• ID
  rs46954548
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:53531710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAT GGCGGTACAG GCCTTAAATC
  C
  TATTTGGGAG GCAAAAGGAG GAGGG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss149013902	ENSMUSSNP1583180	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss324341591	CHEV_13_53473043	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46954548					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:53531710 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5620	CpG island 5620	95 bp distal
Rr403780	regulatory region 403780	71 bp downstream
Rr480032	regulatory region 480032	within coordinates
Sptlc1	serine palmitoyltransferase, long chain base subunit 1	309 bp upstream
Tssr122583	transcription start site region 122583	301 bp upstream