rs46954972 SNP Detail

Summary

• ID
  rs46954972
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:97797233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGACAGT CTAGGTTATA
  AAGCAAATTC CAGGTCGGCC AGGGCTGCAT AATGAGACCA TGTCTCAAAA TGAAAAACGT
  TACCAAGACA AACTGGTTTA TCCTTGTGAT CTCAACTATT TGGGAGGCAG AGGCAGGAGG
  ATCAGAAGTT CAAGGCTAGC CTATCTCAAT ACAAAATGAA ATGGGACCAG GAGATAACCC
  R
  TTGGTAAGCA CTTATACCCT GTGTGCAAGG TCTGGGTTCT GTCCCCAGTA CTTACAAACA
  CACAACCGAT AGGCTGACTA AATCCTCCCT AAGTGGCCAT TCCAGCAGCC TGCTTCTTAT
  ACTCTACATC TCTCCCCCAA AGAACAGAGA TGAGACAGTT TCCAGCAACG CTGACAGCTT
  CTCCCACACT GTCGTATACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss60427114	NES15930546	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs46954972					SNP	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60427114	NES15930546	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:97797233 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13598	CpG island 13598	1007 bp distal
Pde4dip	phosphodiesterase 4D interacting protein (myomegalin)	1210 bp upstream
Rr581573	regulatory region 581573	746 bp distal
Tssr34685	transcription start site region 34685	1270 bp upstream
Tssr34686	transcription start site region 34686	1098 bp upstream
Tssr34687	transcription start site region 34687	1072 bp upstream
Tssr34688	transcription start site region 34688	988 bp upstream