rs46955068 SNP Detail

Summary

• ID
  rs46955068
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:184468412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAGATTCT GGGGAATATA
  ATATGTGAAG TTACTCCTAT CTCCACATGG GGACTCCATC TCTGGTTCAC TTTCTGTCAA
  ACATGCTACC AGGGTGGGAG TTGTTTTGTT TTGTTTTGTT TTGTTTTGTT TGGAAGGAGA
  GAGAAACAAA TATTTGTAAA GAAAACAGAA GTAGAAATGC AGCATGTCCT GGTATTGAAG
  M
  CTTTGAGAGA CTTGCCTGCT CCTCCACCAG CTAGAGTTAG ATTTATGGCC CGCTGGTCCA
  GTTCACAATT GTCGGTGGAT GCAGGACGTT GGGTGGGTGG GTGGGGCTTC TAAATATTAC
  AGTTTAGGCT CTAGAGAACA TTTACAAGGA AAGAGAGAGA GGCTGTGAGG GAGAGAACTA
  TTCTAAACAG ACTCACCTGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60355369	NES15858935	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	C	A	A	A	C		C	A	C	A		A
ss320168855	CHEV_1_186560094	CHEVERUD	SCREENING_POP	f	SNP									C					A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46955068					SNP	A	A	A	C	A	A	A	C	C	C	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60355369	NES15858935	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184468412 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1159	CpG island 1159	1469 bp distal
Gm34342	predicted gene, 34342	within coordinates
Rr425268	regulatory region 425268	141 bp distal
Rr425269	regulatory region 425269	1597 bp proximal
Rr425270	regulatory region 425270	1860 bp proximal
Tssr10590	transcription start site region 10590	806 bp downstream
Tssr15648	transcription start site region 15648	1188 bp upstream