rs46955324 SNP Detail

Summary

• ID
  rs46955324
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:58954648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTCAGATC AGGCTCGCGA
  ATGGCCCGCA GCGACCATTT AACTGCACCC GCACGTTTGT CACTCGACCC TCCGGAATCA
  TCTCACGTGT CCCCACTGAG ACTCTAGGGC GCTGCCGGAG CCCGGCCTCT CGGTAGCTGG
  AAGCACATCC TGCCTCGGGC AGCGCGGGTG CAGGGTACAC GTTGGCGCAC ATGCACGCGC
  K
  CACACGAACA CGCGCAAGGT ACGGCAGGGC AGGGGACAGG GGCTTGGGTG CTCCGCGTGC
  GGGTGGGTGT CGCGGGGAGT GAAGCTGTGA TCCTCAAATG GCTGCATCCT GCCAGGTTAA
  GGAATAAGAG AAGATGATGC GGAGCCATCC ATTCCACAGG CCAGGGTCGG TGCAAAGCAT
  TTAGGGAACC CACAGCGCGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52643912	NES15465412	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46955324					SNP	G	G	G	G	G	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52643912	NES15465412	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:58954648 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5731	CpG island 5731	within coordinates
Ntrk2	neurotrophic tyrosine kinase, receptor, type 2	within coordinates
Rr273002	regulatory region 273002	248 bp distal
Rr281494	regulatory region 281494	within coordinates
Tssr120082	transcription start site region 120082	212 bp downstream
Tssr120083	transcription start site region 120083	179 bp downstream
Tssr120084	transcription start site region 120084	859 bp upstream
Tssr120085	transcription start site region 120085	985 bp upstream
Tssr120086	transcription start site region 120086	1027 bp upstream
Tssr120087	transcription start site region 120087	1050 bp upstream
Tssr120088	transcription start site region 120088	1429 bp upstream
Tssr120089	transcription start site region 120089	1849 bp upstream