rs46955889 SNP Detail

Summary

• ID
  rs46955889
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:96804406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATGGGCCT GTGGATAATG
  CACTTGCATC TAAGCCTCAC TGCTTCTAAC ACTGCAGACT GAGCTCTGAC CGCCACGCTC
  AGGCCACAGT ACACACCAGT GCACACAAAC ACACACAATA GAATACAAAT GATGACAAGA
  AACCAACTAA CAGCCCACTG ATTGTCAGCA AGAATTCAAA TAGATCTCAC ACATCTACTA
  R
  GAAAGTGACT TATTGACTGA TGACACCAAC TAGCCAGGCA GTGGTGACAA GGGAGGCAGA
  GGCAGTCAGA TCTCTGAGCT CAAAGCCAGT CTGGGCTACA CAGAGAAACC CTGTCTGGAA
  AAAAACAAAA CAAAACAAAA AAAAAGGGAC CACCACCACC AAATTAAAGG AGGCAAAAAA
  GTACTGGGGC GAGGGTGGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
ss61944121	NES17104378	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
rs46955889					SNP	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61944121	NES17104378	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:96804406 () rs orientation: forward

Symbol	Name	Function Class
Hmgcr	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	within coordinates
Rr281794	regulatory region 281794	1005 bp distal
Rr281795	regulatory region 281795	within coordinates
Tssr123569	transcription start site region 123569	1171 bp upstream