rs46956650 SNP Detail

Summary

• ID
  rs46956650
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:12502484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCAGTTGC CCCAATAGTA
  AGCCATCCTC TTGCCCTTGG GCATACAGTC CCGCAGTTTG TTACTGTGCG GAGCTAGACC
  CTGAGGTCTC CAGATGGGAT CAGAGGGCTT TCAACACCCC AGCCGGGCCA CTGATCGGTG
  ATGGTCTTCC TTGCCCTCCG TTTCCTTCTT CTTCCTTGCC CTCCTTGTCC TGTGCCAGTC
  Y
  CTCGCCTTCA TCTATGCCTT CTCTAACCTC TTGTCTTTTC TCCAAATGTA TTCCTTGCCC
  CCCACCACAC TGCCTGATAC AGATTCTTTA GTTTGATCTC CAACTTTTTA TTTAAACCAA
  CTGGCACGGC TTGTGAATGC TTTAAAAACA CATTCTAATA AACTAAGTGC TATCTAGGGA
  ATAGGGAGAG CACAGAGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss60571599	NES16043279	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T		C	T	T		T
ss322498725	CHEV_8_12452484	CHEVERUD	SCREENING_POP	f	SNP									T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs46956650					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60571599	NES16043279	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:12502484 () rs orientation: forward

Symbol	Name	Function Class
Gm56835	predicted gene, 56835	within coordinates
Rr381713	regulatory region 381713	1447 bp upstream