rs46957076 SNP Detail

Summary

• ID
  rs46957076
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:116422985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GACTTTAAGA AGCGATGCGA AGATAGAGGT GGGTGGGGTC
  GCGCGGGGGC CGGTGTGGGC GCGCCAGTTC TCTGTAACCG GAGCTAAACC AATGCAGCTT
  Y
  CTTGGGAGTT TGGTGTCTGT TTTTGGTGCT TGGTAGGATT TGGGAGCTTC TTTTTCCAAG
  TCTCCGCTAA TAATCTTCCA AAAATTTAAC TCCGGTTAGT C                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132887380	ENSMUSSNP6235565	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46957076					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:116422985 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4188	CpG island 4188	within coordinates
Rr460326	regulatory region 460326	1224 bp distal
Rr460327	regulatory region 460327	238 bp distal
Rr460328	regulatory region 460328	within coordinates
Rr460329	regulatory region 460329	777 bp proximal
Rr460330	regulatory region 460330	908 bp proximal
Rr460331	regulatory region 460331	1087 bp proximal
Sphk1	sphingosine kinase 1	within coordinates
Sphkos	sphingosine kinase 1, opposite strand lncRNA	within coordinates
Tssr3738	transcription start site region 3738	339 bp upstream
Tssr3739	transcription start site region 3739	1813 bp downstream
Tssr105960	transcription start site region 105960	1056 bp downstream
Tssr105961	transcription start site region 105961	317 bp downstream
Tssr105962	transcription start site region 105962	285 bp downstream
Tssr105963	transcription start site region 105963	263 bp downstream
Tssr105964	transcription start site region 105964	145 bp downstream
Tssr105965	transcription start site region 105965	263 bp upstream
Tssr105966	transcription start site region 105966	282 bp upstream
Tssr105967	transcription start site region 105967	391 bp upstream
Tssr105968	transcription start site region 105968	1098 bp upstream
Tssr105969	transcription start site region 105969	1126 bp upstream
Tssr105970	transcription start site region 105970	1803 bp upstream
Tssr105971	transcription start site region 105971	1878 bp upstream
Tssr105972	transcription start site region 105972	1899 bp upstream
Tssr111937	transcription start site region 111937	910 bp downstream
Tssr111938	transcription start site region 111938	1536 bp downstream