rs46957358 SNP Detail

Summary

• ID
  rs46957358
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:50319216 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACTT TGTCCTACAG GTGAAAATAA
  S
  ACATTAGGTA AATGAGAGCA GAAGC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135158347	ENSMUSSNP6751193	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	G
ss320757139	CHEV_3_50168689	CHEVERUD	SCREENING_POP	f	SNP				G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46957358					SNP	C	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50319216 () rs orientation: forward

Symbol	Name	Function Class
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	Intron
Tssr33101	transcription start site region 33101	1645 bp downstream
Tssr33102	transcription start site region 33102	1666 bp downstream
Tssr33103	transcription start site region 33103	1750 bp downstream
Tssr33104	transcription start site region 33104	1762 bp downstream
Tssr33105	transcription start site region 33105	1823 bp downstream
Tssr33106	transcription start site region 33106	1867 bp downstream
Tssr33107	transcription start site region 33107	1892 bp downstream
Tssr33108	transcription start site region 33108	1956 bp downstream