rs46957709 SNP Detail

Summary

• ID
  rs46957709
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191569322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGGATGGG CTCTAATAAA
  ATGCAAATAT TTAAACTAAG GGGGGGGAGC ATGAGTGAAA CCAAGAATAA ATCCAACATA
  ATTGCAGTAA TTACACCCGG AGCCAAGCCT TGAGGGAGCA GAGCGCTCAC TGAGGTAAGG
  CAGGAGAGAC ATCTCAGGGT GTGGCATAGG CCTTTGCTGA ACCTCCGCCT GCAATGGACC
  R
  GGCAGTATTG TCTGGAAATC TTGTTAAAAT ATAGATTCAA TTCAACAGAT GCAGGGTGGG
  CCAGATAATC TGTCCTAACT GCTCTAGGGT AGACTGCTCG CTGTTTGGTA ATTTCCCAAC
  TGTACAGGAG GGGCTGAGAG CCCACCAGGC TCAGGGAGCT GTGCAAAGCA GGTGGTTGAA
  CAGGGGACAA AGTAGACCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60360506	NES15857511	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46957709					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60360506	NES15857511	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191569322 () rs orientation: forward

Symbol	Name	Function Class
Rr426232	regulatory region 426232	1911 bp distal
Rr426234	regulatory region 426234	541 bp proximal
Rr426235	regulatory region 426235	1619 bp proximal