rs46958163 SNP Detail

Summary

• ID
  rs46958163
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108539293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTCTGGGG AGTGCACAGA
  TGCATAGGAC CACAGAGGAC CAGAGAAAGA AAAAAACTCA AGTCCAAGAA GACTTCCTGG
  AGGAGTAAGT CCCTGACAAT CATTCCCAAG CCCCTCCCAT ACATCATTAG GGAAAGAGCC
  CCGCCCACTA AGGAGGAGGG CAGCCGGAAG TAGACTTCAG GGCGGAAGCC AGGCTAGTAC
  S
  ACTGGGCCCT CTTTCCGACC TGCCCACGGC CCCGCCCACC TGAATGTAGG TGAAAGGTCG
  GCGGAGCCGC TCGGGCAGCG GAGCAAGACC AAGACTGCCC GGAGCTGACA GACAGACAGA
  CAGAAGACTG AGCATGGCAG ACGAGCCGAA ACCCATCAGT CCGTTTAAGA ACCTCCTGGC
  TGGCGGCTTC GGCGGCATGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J
ss61448826	NES16836366	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J
rs46958163					SNP	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61448826	NES16836366	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108539293 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22350	CpG island 22350	within coordinates
Rr401686	regulatory region 401686	within coordinates
Rr686857	regulatory region 686857	within coordinates
Slc25a20	solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20	42 bp upstream
Tssr87151	transcription start site region 87151	1 bp downstream
Tssr87152	transcription start site region 87152	5 bp upstream