rs46958318 SNP Detail

Summary

• ID
  rs46958318
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:22173105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTCATTT CCATTCACCC
  ATCTTCAAGT GTATAAATCC TTCTTCCTGT CCTTTAGCTT TCTGGTAAGC CTCATATTTG
  AAGGAATTCT TGCCTCCTGT TATTATATTC ATCTAAGACA CAGAAGAAAC ATTGTCTCTT
  AGAATTCAGA AGGTTAAGAC AGGAGAACTT CTCATTTGGG GTCAGCTTGG CCTAAATGGC
  R
  AGACATGTTT CTAGGGAAAG AATTTCAGCA GAGAATCAAT GGATAATGTG CGTCTAAAAA
  TCAAAATGTG CAGCAGCAGC AGCAACAACA ACAACAGTAG CAGCAACAAC AACAACAGTA
  GTAACAGCAA CAACAGCAGC AGCAAATTCA CTGAATCAGC CCGTGGTACA GTGGAGATGA
  TAGAGTAAGG GCAGGGAGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss139202784	ENSMUSSNP5235520	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs46958318					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:22173105 () rs orientation: forward

Symbol	Name	Function Class
Lrmda	leucine rich melanocyte differentiation associated	within coordinates
Tssr124480	transcription start site region 124480	863 bp downstream
Tssr124481	transcription start site region 124481	584 bp downstream
Tssr124482	transcription start site region 124482	185 bp downstream
Tssr124483	transcription start site region 124483	191 bp upstream
Tssr124484	transcription start site region 124484	264 bp upstream
Tssr124485	transcription start site region 124485	740 bp upstream
Tssr124486	transcription start site region 124486	836 bp upstream