rs46959263 SNP Detail

Summary

• ID
  rs46959263
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:23862060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACGCA CATACGCGCC AAGAGAAAGC
  G
  GGAGGAGCTG AGCAACGTGC TGGCA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145329854	ENSMUSSNP2224879	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46959263					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:23862060 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8679	CpG island 8679	1462 bp proximal
Gm7773	predicted gene 7773	within coordinates
Mmp25	matrix metallopeptidase 25	within coordinates
Rr339268	regulatory region 339268	1340 bp proximal
Tssr142937	transcription start site region 142937	873 bp downstream
Tssr146619	transcription start site region 146619	1320 bp upstream
Tssr146620	transcription start site region 146620	1867 bp downstream
Tssr146621	transcription start site region 146621	1893 bp downstream
Tssr146622	transcription start site region 146622	1913 bp downstream
Tssr146623	transcription start site region 146623	1961 bp downstream
Tssr146624	transcription start site region 146624	1980 bp downstream