rs46959672 SNP Detail

Summary

• ID
  rs46959672
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:142676824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGACCTGAC CCACCAGTAC
  AGGCCTCACC CACAGGCACA GGCCTCACCC ACAGGGCTCA GGCCTCACTC AGAAGGCATA
  GGCCTCACCC ACAGGGCATA GGCCTCACTC AGAGGGCTCA GGCCTCACCC ACAGGACACA
  GACCTTCCCC ACAGACAAGT GTCTCCCCCA TTGCCCCACA CCCTCCACAC AATGGTTTTG
  Y
  GCCAAGTTAC ACAATGCCCA GGTCACCTGT TTGTGCTACT GACCATCTAG GACTTACTTG
  ACCAAATTGA TGGATCAATA GTTGTCACAT ATCAATTAAG GTGACCTCCA TCCTGATGTG
  ATATCCTGAT ACACGGGTGA CACAGCTGAG AGCACTTGTC TTAGGTTACA CAGTGAGGAC
  AGGACAAGTG TTATAACCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60850517	NES16004484	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46959672					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60850517	NES16004484	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:142676824 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16953	CpG island 16953	1268 bp proximal
Gm40352	predicted gene, 40352	within coordinates
Rr117018	regulatory region 117018	1424 bp distal
Rr127813	regulatory region 127813	778 bp proximal
Slc29a4	solute carrier family 29 (nucleoside transporters), member 4	1443 bp upstream
Tssr49584	transcription start site region 49584	1388 bp upstream
Tssr49585	transcription start site region 49585	1413 bp upstream