rs46959742 SNP Detail

Summary

• ID
  rs46959742
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:61737006 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCCTCCT GACCCTCTTT
  CTTGGGTGGG CTCTGACCTT GAAAGCATCC CTTCCTCCTG CAGCCTCTCT GTCCAGACAT
  GGTGTGAGCC CAGTGCTTCC CTTCCGCCAT GTCCCCACTA CTCCTTGTCA CCGCACCCAT
  TATCTGTACT GTCACAGCCA ATGAGGTTGC CATCATGGGC CTGGATTGCA AAGAGTTATG
  Y
  TTGTATCATC TCCCTCGTGC CTGGAAGCCT CTAGGTTGTT GGTAAGGGTC AGATCTCTCC
  TATTGGTCTC TGAAGAACAG CTGGGGGGGG GCATGCAGAT GTCCCGGGGG GGTGTGGACA
  TGCAGATGTC CCTAGCTTAG CCGTGACCTG CCTAGTGCCC CCTTGGGGTC CAGCATCCCA
  CTCTGTTCAA TGGGGCTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61280744	NES16780059	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46959742					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61280744	NES16780059	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:61737006 () rs orientation: forward

Symbol	Name	Function Class
Col13a1	collagen, type XIII, alpha 1	within coordinates