rs46960213 SNP Detail

Summary

• ID
  rs46960213
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141149649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGAC ACAGATTGAG GTGCGTGAGG
  Y
  TCACCTCACT CCATCCCTCG GGGAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss640642738	FVB_NJ_4_140978253	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T	T	T	C	C	T	T	C	C	C	C	T	T	T	T	C	T	T	C	T	T	T	C	T	C	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs46960213					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T	T	T	C	C	T	T	C	C	C	C	T	T	T	T	C	T	T	C	T	T	T	C	T	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss640642738	FVB_NJ_4_140978253	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141149649 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15227	CpG island 15227	498 bp distal
Gm70184	predicted gene, 70184	1279 bp upstream
Hspb7	heat shock protein family, member 7 (cardiovascular)	within coordinates
Rr100445	regulatory region 100445	within coordinates
Tssr40053	transcription start site region 40053	1540 bp downstream
Tssr40054	transcription start site region 40054	662 bp downstream
Tssr40055	transcription start site region 40055	649 bp downstream
Tssr40056	transcription start site region 40056	628 bp downstream
Tssr40057	transcription start site region 40057	567 bp downstream
Tssr40058	transcription start site region 40058	540 bp downstream
Tssr40059	transcription start site region 40059	516 bp downstream
Tssr40060	transcription start site region 40060	456 bp downstream
Tssr40061	transcription start site region 40061	446 bp downstream
Tssr40062	transcription start site region 40062	170 bp upstream
Tssr40063	transcription start site region 40063	1658 bp upstream
Tssr40064	transcription start site region 40064	1718 bp upstream
Tssr40065	transcription start site region 40065	1733 bp upstream
Tssr40066	transcription start site region 40066	1862 bp upstream
Tssr40067	transcription start site region 40067	1910 bp upstream
Tssr40068	transcription start site region 40068	1962 bp upstream
Tssr44314	transcription start site region 44314	285 bp downstream
Tssr44315	transcription start site region 44315	1696 bp downstream
Tssr44316	transcription start site region 44316	1779 bp downstream
Tssr44317	transcription start site region 44317	1837 bp downstream