rs46960476 SNP Detail

Summary

• ID
  rs46960476
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:29528915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTTCATGT CTCTACCTAC
  ATTCATGCTG ACACTGAAGA AGAAGCTGCA GTGACAGGTC ATGCTATTAT CATTTTTGGG
  GTAGCACAAA TCAACCTTGG TCATTCCCTG TGGCATTGAT GGGACAGTAG GAGAGGACAT
  AAGTAGTGTC TGGTGCAGAC CATTGTTCAG TTGCTGGATG CAAATATATT CTAATGAGGT
  R
  GAAATGTAAG CTGAAAACTC AAGGCCTTCA ATATTGCTGG AAGTTGAGTT TAAAGTACCC
  TAGCCTTTTG AGAATACTTT CAATTCTGTG ATCTTTTAAT TTTCAAAAAA GCAATCCAAA
  AGGAGCCTTT TTTCCCTTTG CAATAGCAAA GTAATGAGTC CCCTTAAAAA AGGATATTTT
  ATAGCTTTCA AATGTCTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63009289	NES17433176	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46960476					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63009289	NES17433176	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:29528915 () rs orientation: forward

Symbol	Name	Function Class
4930578E11Rik	RIKEN cDNA 4930578E11 gene	854 bp downstream