rs46961075 SNP Detail

Summary

• ID
  rs46961075
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:25788821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGGAGGT GGGACTGTGC
  AGCTGTCTTC AATAATGCCT GCCTTTCTCA GGCCAAAGTG CTCATTGAGC CTGTCACTTT
  CACCTGCTCT TTCCTTCCCC AATTCCAGGT TCCTGTGGCC TGGGAGCAGT ACCTGCCAGA
  GGACTTGGAC TCCTCATGGA CCCCGGAGTC CCAGCTTCTG CCCAGGACAA AGCAGCTTGA
  Y
  GCCTACCCAA TATGCCTACA GGCCGTGGTG GCCACTCGAT GCTAGGATCC CCAGTTCTGC
  AGTTCTCAGC AGGATATCCC AGGAGAGGAG AAAGGACTGG AGGGTCACAC TCCAGGCACT
  GGCCTCCGTC CATCTCCAAA GTCCCACACC TGGTGTCTCT GTTGACCAGA CCCACCCTGG
  AACCAGCCCA GGAGCACAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60552846	NES16573405	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46961075					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60552846	NES16573405	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25788821 () rs orientation: forward

Symbol	Name	Function Class
Cerox1	cytoplasmic endogenous regulator of oxidative phosphorylation 1	964 bp upstream
Cpgi8770	CpG island 8770	1817 bp distal
Cpgi8771	CpG island 8771	within coordinates
Rr523606	regulatory region 523606	1856 bp distal
Rr523607	regulatory region 523607	832 bp proximal
Rr523608	regulatory region 523608	1193 bp proximal
Rr523609	regulatory region 523609	1307 bp proximal
Sox8	SRY (sex determining region Y)-box 8	Intron
Tg(CD3E)26Cpt	transgene insertion 26, Cox Terhorst	within coordinates
Tssr143165	transcription start site region 143165	975 bp upstream
Tssr143166	transcription start site region 143166	1027 bp upstream
Tssr146845	transcription start site region 146845	831 bp downstream