rs46961421 SNP Detail

Summary

• ID
  rs46961421
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:42402707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTGTGAGG AGTTTAAAAG
  CTAAACCCAG GTTTTTATAG GAGCATAGTT TATAACACAG ATATCATGAG TAGAGACCAG
  GGGTGCATCT CAGTGGCAAA GTGCATGTTT AGCATGTACC AAACCACATA GAAATCAGTG
  GACAGGTGAA TTCAGTTAAA GACTTTGGAA AATCTGGAGA GTATTAAGGA CTACAATATA
  Y
  GGCTGCTGGT AATTGTAGAT AGAAGATCTA ACTGTCTAAA ACAAGTAGGA AATAAAAAAC
  ATAAAGCCAG GCATGGTGGC CCACGCCTTC AATCCTAGGA GACAGAGGCA GGAGGATCTC
  TGAGTTCAGG CTAGTCAGTT TCAGGACAGC TAGGGCTACA AAGAGAAACC CTATCTCAAA
  AATCAAATGT ATGTACATTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61273602	NES16777609	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	T	C	C	C	T		C	C	T	C
ss147079668	ENSMUSSNP126588	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46961421					SNP	C	C	C	C	C	C	C	T	C	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61273602	NES16777609	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:42402707 () rs orientation: forward

Symbol	Name	Function Class
Rr219442	regulatory region 219442	694 bp proximal
Rr227589	regulatory region 227589	108 bp distal
Snx3	sorting nexin 3	within coordinates