rs46962420 SNP Detail

Summary

• ID
  rs46962420
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:124019395 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCATTTCT ACACCTACGA
  AAAATGGTGT AAATCCATCA GCTTGCTTTA CTTTAATATC TTCTGTAATG TTCAAAGTGC
  TGAACAATAG CGGCTAGAGG TAGTTCAAAG AACCCTTCCA CAGGGGTCAC ATATCAGACA
  TCCTGAACAT CAGGTATTTA CATTATTATT CATAACAGTA CCAAAATTAC AGTTATGAGT
  Y
  AACAAGGAGG ATAATTTTAT GGTTGGGGTC ACCAGAACAT GAGGAATTGT AATAAAGTGT
  TGCAGATATA AGAGGGTTGA GAACCACTTT GCTAGAAAAG AAGTGTTTCC ACAGACTTTG
  ATGGAGTCAA AAATCAAATG AAATAATTTC AAGTGCATTT ACAAATGTGA ATAAAATCCG
  TAGTTAAGAG TCAAGAATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135782580	ENSMUSSNP5651669	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320926403	CHEV_3_123928664	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs46962420					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:124019395 () rs orientation: forward

Symbol	Name	Function Class
Rr584579	regulatory region 584579	433 bp proximal