rs46963190 SNP Detail

Summary

• ID
  rs46963190
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99242262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTCAGGG ACCCAGAGCT
  GTCTCCAGCA AGGCGAGGCA GAAGGAACAC TTGGGATACA CAGATCGAGA TATTACCTGT
  CAGGGCTCTG CTCCTCACCC GAGTAGAATG TTGTCCCTTC CCGCCACTGT GCAGCCCTGC
  AGGAACAGGT CCTGGTTAGA CTGCCAAGCT CCCGGGGAGA GGTCATCCCT TTGTCTTTCG
  Y
  GCTCACAGGC CCACACCTCC TTACCACCTG ACTCAATGTG TTTGCACAGA GTGTGGAAGA
  TGCACACGTG AGGGAGAGTT GCAAAGACAG TGGCTGGCTG TGAGTGCAAT GTTCAATGTC
  CAACGTGAGA CCCGTGACAT CCTTTGGGAC TTTATTGCCC CAGCGGGATT GTTCTCTCTG
  TTCCCAGACA CACCAAGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61444646	NES16824608	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C		C	C	T	T		C
ss323135629	CHEV_9_99260628	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46963190					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61444646	NES16824608	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99242262 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22193	CpG island 22193	1504 bp distal
Esyt3	extended synaptotagmin-like protein 3	1652 bp upstream
Rr198328	regulatory region 198328	539 bp proximal
Rr206935	regulatory region 206935	1461 bp distal
Tssr91051	transcription start site region 91051	1657 bp upstream