rs46963443 SNP Detail

Summary

• ID
  rs46963443
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:108777076 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCTAAGCA GAGGTGGTCC
  TTCCAGACCC AAGCCTCCTT TACTGGATAA CCACCTGCTA GCATGACCCT TGTACTACTA
  ACTCTACCCA CCAGGAAGTA AGTGTGCAAC CCGAAGCAGT CTATCCTCTG CAATCACCAC
  CAAAGGCCTT AACCCACAAG CCCCTGTGGT CTCTCTTCCT GGCAAGACCC TTCTCCGACC
  W
  GATTCACACC CCAGCAGTGG CCCTTCATAG CGATGGCCTG ATTTACATCC CAGCAGTGTC
  TTTTCCCGCA GACCCTGCCC GGAGAGATGA CTCCCTGCGG CCCTGATCTG ACCCACACCT
  CAGTCGTGAC TCTCTAGGTC TCAGACTTGA TTCACACCCT GGACACGATC CTCCTTGCTG
  CCCCTGCTTA AAGCGGTGAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61215760	NES16730231	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46963443					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61215760	NES16730231	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:108777076 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi16204	CpG island 16204			within coordinates
Gak	cyclin G associated kinase			Intron
				Noncoding-Transcript-Variant
Rr616724	regulatory region 616724			519 bp proximal
Rr616725	regulatory region 616725			810 bp proximal
Tmem175	transmembrane protein 175			573 bp upstream
Tssr47844	transcription start site region 47844			581 bp upstream
Tssr47845	transcription start site region 47845			780 bp upstream
Tssr47846	transcription start site region 47846			818 bp upstream
Tssr52443	transcription start site region 52443			461 bp downstream
Tssr52444	transcription start site region 52444			476 bp downstream
Tssr52445	transcription start site region 52445			502 bp downstream